Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20)
  Conformer 1
(PDB)
3app  
  Conformer 2
(PDB)
4ape  
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 258 1.37   7 - 197   207 - 222   256 - 268   274 - 285   292 - 317
2 53 1.47   198 - 206   223 - 255   269 - 273   286 - 291

Sequence


           ________________________________________________________________________________________________________________________ 
 3app    : AASGVATNTPTAN-DEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPS--ATGKELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQD 
         :                                                                                                                          
 4ape    : *STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTED 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________197________206_____________222___________ 
 3app    : TNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQS--GDGFSGIADTGTTLLLLDDSVVSQYYSQV 
         :                                                                                                                          
 4ape    : STIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQV 
           _______________________________________________________________________________196________205_____________224___________ 

           ___________________255__________268__273__________285_289___________________________________                             
 3app    : SGAQQDSNAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGST-CLGGIQSNSGIGFSIFGDIFLKSQYVVFD-SDGPQLGFAPQA                             
         :                                                                                                                          
 4ape    : SGAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK*                             
           ___________________256__________269__274__________285_289___________________________________                             

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.4
Translation
(A)
0.0
Closure
(%)
28.0
Bending Residues
( green )
  197 - 202
  206 - 211
  222 - 223
  255 - 256
  268 - 269
  273 - 275
  285 - 286
  289 - 296
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download