Acriflavine Resistance Protein B

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acriflavine Resistance Protein B
  Conformer 1
(PDB)
2gif (A)
  Conformer 2
(PDB)
2gif (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 811 1.89   7 - 36   130 - 130   135 - 577   583 - 615   621 - 674   726 - 811   868 - 1031
2 214 1.45   37 - 129   131 - 134   578 - 582   616 - 620   675 - 725   812 - 867

Sequence


           _________________________________36_____________________________________________________________________________________ 
 2gif(A) : PNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQE 
         :                                                                                                                          
 2gif(C) : PNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQE 
           _________________________________36_____________________________________________________________________________________ 

           _____129________________________________________________________________________________________________________________ 
 2gif(A) : VQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRLT 
         :                                                                                                                          
 2gif(C) : VQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRLT 
           _____129________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2gif(A) : STEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQN 
         :                                                                                                                          
 2gif(C) : STEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQN 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2gif(A) : FRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALS 
         :                                                                                                                          
 2gif(C) : FRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALS 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________577__582___________________ 
 2gif(A) : VLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTK 
         :                                                                                                                          
 2gif(C) : VLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTK 
           _____________________________________________________________________________________________577__582___________________ 

           ___________615__________________________________________________668_____________________________________________________ 
 2gif(A) : EKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGL 
         :                                                                                                                          
 2gif(C) : EKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGL 
           ___________615__________________________________________________668_____________________________________________________ 

           _725___________________________________________________________________________________811______________________________ 
 2gif(A) : EDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAM 
         :                                                                                                                          
 2gif(C) : EDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAM 
           _725___________________________________________________________________________________811______________________________ 

           _______________________867______________________________________________________________________________________________ 
 2gif(A) : ELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLI 
         :                                                                                                                          
 2gif(C) : ELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLI 
           _______________________867______________________________________________________________________________________________ 

           ________________________________________________________________________                                                 
 2gif(A) : EATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRF                                                 
         :                                                                                                                          
 2gif(C) : EATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRF                                                 
           ________________________________________________________________________                                                 

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.5
Translation
(A)
-1.1
Closure
(%)
62.6
Bending Residues
( green )
  36 - 37
  129 - 135
  577 - 578
  582 - 583
  615 - 621
  668 - 681
  725 - 726
  811 - 813
  867 - 872
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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