Acylamino-Acid-Releasing Enzyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acylamino-Acid-Releasing Enzyme
  Conformer 1
(PDB)
3o4j (A)
  Conformer 2
(PDB)
3o4j (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 310 1.39   21 - 321   377 - 377   559 - 566
2 260 0.92   8 - 20   322 - 376   378 - 558   567 - 579

Sequence


           __________15____________________________________________________________________________________________________________ 
 3o4j(A) : IMPVEFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEA 
         :                                                                                                                          
 3o4j(B) : **PVEFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEA 
           __________15____________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3o4j(A) : VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSY 
         :                                                                                                                          
 3o4j(B) : VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSY 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________319____________________________________________ 
 3o4j(A) : RPTAITWLGYLPDGRLAVVARREGRSAVFIDGERVEAPQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGEPLLEGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTPGPTV 
         :                                                                                                                          
 3o4j(B) : RPTAITWLGYLPDGRLAVVARREGRSAVFIDGERVEAPQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGEPLLEGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTPGPTV 
           _________________________________________________________________________319____________________________________________ 

           __________376___________________________________________________________________________________________________________ 
 3o4j(A) : VLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDA 
         :                                                                                                                          
 3o4j(B) : VLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDA 
           __________376___________________________________________________________________________________________________________ 

           ________________________________________________________________550_______________________________                       
 3o4j(A) : AFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNNSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQRER                       
         :                                                                                                                          
 3o4j(B) : AFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNNSRTPLKPLLRLMGELLARGKTFEAHIIPDA--aINTMEDAVKILLPAVFFLATQRER                       
           ________________________________________________________________550_______________________________                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
28.2
Translation
(A)
-0.2
Closure
(%)
88.3
Bending Residues
( green )
  15 - 23
  319 - 331
  376 - 378
  550 - 567
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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