Acyl-Coa Dehydrogenase Family Member 8, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acyl-Coa Dehydrogenase Family Member 8, Mitochondrial
  Conformer 1
(PDB)
1rx0 (A)
  Conformer 2
(PDB)
1rx0 (C)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 344 0.23   17 - 152   164 - 225   237 - 382
2 22 0.19   153 - 163   226 - 236

Sequence


           ________________________________________________________________________________________________________________________ 
 1rx0(A) : TSCIDPSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCT 
         :                                                                                                                          
 1rx0(C) : *SCIDPSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCT 
           ________________________________________________________________________________________________________________________ 

           ____________________152________163___________________________________________________________225________236_____________ 
 1rx0(A) : MEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVR 
         :                                                                                                                          
 1rx0(C) : MEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVR 
           ____________________152________163___________________________________________________________225________236_____________ 

           ________________________________________________________________________________________________________________________ 
 1rx0(A) : GLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDS 
         :                                                                                                                          
 1rx0(C) : GLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDS 
           ________________________________________________________________________________________________________________________ 

           ________________________                                                                                                 
 1rx0(A) : RVHQILEGSNEVMRILISRSLLQE                                                                                                 
         :                                                                                                                          
 1rx0(C) : RVHQILEGSNEVMRILISRSLLQE                                                                                                 
           ________________________                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.5
Translation
(A)
-0.1
Closure
(%)
98.7
Bending Residues
( green )
  152 - 153
  163 - 164
  225 - 226
  236 - 237
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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