Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase
  Conformer 1
(PDB)
1zak (A)
  Conformer 2
(PDB)
1zin  
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 172 1.77   10 - 124   152 - 209
2 23 0.9   125 - 147

Sequence


           ________________________________________________________________________________________________________________________ 
 1zak(A) : ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETL--EI--RPDTFILLDVP 
         :                                                                                                                          
 1zin    : ***MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQ-NGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVR 
           ________________________________________________________________________________________________________________________ 

           ___124___________________146__________________________________________________________________________________           
 1zak(A) : DELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASR----LTQRFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSST           
         :                                                                                                                          
 1zin    : QDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGLAR*********           
           ___122___________________144__________________________________________________________________________________           

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.9
Translation
(A)
-0.4
Closure
(%)
89.7
Bending Residues
( green )
  124 - 125
  146 - 155
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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