Alanine Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alanine Dehydrogenase
  Conformer 1
(PDB)
2eez (A)
  Conformer 2
(PDB)
2eez (C)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 203 0.25   8 - 130   233 - 248   262 - 351
2 115 0.2   131 - 232   249 - 261

Sequence


           ________________________________________________________________________________________________________________________ 
 2eez(A) : MVIGVPKEIKTLENRVALTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAWGAEMVVKVKEPLPEEYGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQL 
         :                                                                                                                          
 2eez(C) : MVIGVPKEIKTLENRVALTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAWGAEMVVKVKEPLPEEYGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQL 
           ________________________________________________________________________________________________________________________ 

           _______130__________________________________________________________________________________________________231_______24 
 2eez(A) : PDGTLPLLVPMSEVAGRMAPQVGAQFLEKPKGGRGVLLGGVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLkL 
         :                                                                                                                          
 2eez(C) : PDGTLPLLVPMSEVAGRMAPQVGAQFLEKPKGGRGVLLGGVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLkL 
           _______130__________________________________________________________________________________________________231_______24 

           8__________261_________________________________________________________________________________________                  
 2eez(A) : VTRDMLSLMKEGAVIVDVAyVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDAALLKGLNTHKGRLTHPGVAEAFGLPYTPPEEALRG                  
         :                                                                                                                          
 2eez(C) : VTRDMLSLMKEGAVIVDVAyVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDAALLKGLNTHKGRLTHPGVAEAFGLPYTPPEEALRG                  
           8__________261_________________________________________________________________________________________                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.2
Translation
(A)
0.0
Closure
(%)
82.9
Bending Residues
( green )
  130 - 136
  231 - 233
  248 - 249
  261 - 290
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download