Atp-Dependent Clp Protease Atp-Binding Subunit Clpx

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Clp Protease Atp-Binding Subunit Clpx
  Conformer 1
(PDB)
3hws (A)
  Conformer 2
(PDB)
3hte (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 214 1.12   67 - 321
2 89 0.27   322 - 410

Sequence


           ________________________________________________________________________________________________________________________ 
 3hws(A) : ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 
         :                                                                                                                          
 3hte(B) : *LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE-gYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________321____________ 
 3hws(A) : IDQIDKISRKSDNPrDVSGEGVQQALLKLIEGTfLQVDTSKILFICGGAFAGLDKVISHRVETGSdKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNAL 
         :                                                                                                                          
 3hte(B) : IDQIDKISR--------sGEGVQQALLKLIEGT-lQVDTSKILFICGGAFAGLDKVISHRVETGsDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNAL 
           _________________________________________________________________________________________________________321____________ 

           ________________________________________________________________________________                                         
 3hws(A) : TKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIY                                         
         :                                                                                                                          
 3hte(B) : TKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY                                         
           ________________________________________________________________________________                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.6
Translation
(A)
-0.5
Closure
(%)
99.6
Bending Residues
( green )
  321 - 322
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download