Atp-Dependent Clp Protease Atp-Binding Subunit Clpx

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Clp Protease Atp-Binding Subunit Clpx
  Conformer 1
(PDB)
3hws (C)
  Conformer 2
(PDB)
3hte (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 188 0.5   66 - 320
2 91 0.32   321 - 411

Sequence


           ________________________________________________________________________________________________________________________ 
 3hws(C) : ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTgKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDK 
         :                                                                                                                          
 3hte(C) : *LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG---kSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL-------eDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDK 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________318____________________________ 
 3hws(C) : ISRnPSITRDVSGEGVQQALLKLIEGTVlQVDTSKILFICGGAFAGLDKVISHRVsEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGV 
         :                                                                                                                          
 3hte(C) : ISR---------gEGVQQALLKLIEG----vDTSKILFICGGAFAGLDKVISHRVsEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGV 
           _________________________________________________________________________________________318____________________________ 

           ___________________________________________________________________                                                      
 3hws(C) : DLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIY                                                      
         :                                                                                                                          
 3hte(C) : DLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY                                                      
           ___________________________________________________________________                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.8
Translation
(A)
0.3
Closure
(%)
86.9
Bending Residues
( green )
  318 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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