Atp Synthase Beta Chain, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp Synthase Beta Chain, Mitochondrial
  Conformer 1
(PDB)
2hld (F)
  Conformer 2
(PDB)
1h8e (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 273 1.53   11 - 129   152 - 152   173 - 186   188 - 188   190 - 219   221 - 255   257 - 330
2 175 1.09   132 - 151   153 - 172   187 - 187   189 - 189   220 - 220   256 - 256   331 - 461

Sequence


           ________________________________________________________________________________________________________________________ 
 2hld(F) : TPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAE 
         :                                                                                                                          
 1h8e(E) : **TTGRIVAVIGAVVDVQFDEG-LPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVE 
           ________________________________________________________________________________________________________________________ 

           129___________________151__________________172___________186_______________________________219__________________________ 
 2hld(F) : QSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINL-EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRD 
         :                                                                                                                          
 1h8e(E) : MeQ--EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRD 
           130___________________150__________________171___________185_______________________________219__________________________ 

           _______255________________________________________________________________________330___________________________________ 
 2hld(F) : EEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQ 
         :                                                                                                                          
 1h8e(E) : QEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGS 
           _______255________________________________________________________________________330___________________________________ 

           ______________________________________________________________________________________________________________           
 2hld(F) : EHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAA           
         :                                                                                                                          
 1h8e(E) : EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIE***********           
           ______________________________________________________________________________________________________________           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.9
Translation
(A)
0.7
Closure
(%)
88.7
Bending Residues
( green )
  129 - 133
  151 - 153
  172 - 173
  186 - 191
  219 - 221
  255 - 257
  330 - 331
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download