Atp Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp Synthase
  Conformer 1
(PDB)
1aqt (A)
  Conformer 2
(PDB)
1fs0 (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 24 3.64   81 - 104
2 77 0.64   4 - 80
3 20 0.58   113 - 132

Sequence


           ______________________________________________________________________________80_____________________104________________ 
 1aqt(A) : *STYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAE 
         :                                                                                                                          
 1fs0(E) : AMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEH------dVDYAQASAE 
           ______________________________________________________________________________80_____________________104________________ 

           ________________                                                                                                         
 1aqt(A) : LAKAIAQLRVIELTKK                                                                                                         
         :                                                                                                                          
 1fs0(E) : LAKAIAQLRVIELT**                                                                                                         
           ________________                                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
118.5
Translation
(A)
-2.6
Closure
(%)
4.8
Bending Residues
( green )
  80 - 81
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
133.5
Translation
(A)
-12.6
Closure
(%)
24.9
Bending Residues
( green )
  104 - 114
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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