Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1cll (A)
  Conformer 2
(PDB)
2dfs (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 53 3.72   10 - 31   59 - 89
2 27 2.33   32 - 58
3 56 3.57   90 - 145

Sequence


           ________________________29________________________55___________________________84_______________________________________ 
 1cll(A) : LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 
         :                                                                                                                          
 2dfs(E) : ****QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 
           ________________________29________________________55___________________________84_______________________________________ 

           _________________________                                                                                                
 1cll(A) : MIREADIDGDGQVNYEEFVQMMTA*                                                                                                
         :                                                                                                                          
 2dfs(E) : MIREADIDGDGQVNYEEFVQMMTAK                                                                                                
           _________________________                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
65.5
Translation
(A)
3.7
Closure
(%)
98.1
Bending Residues
( green )
  29 - 32
  55 - 59
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
141.5
Translation
(A)
9.9
Closure
(%)
79.6
Bending Residues
( green )
  84 - 90
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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