Cytochrome B6-F Complex Iron-Sulfur Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cytochrome B6-F Complex Iron-Sulfur Subunit 1
  Conformer 1
(PDB)
4ogq (D)
  Conformer 2
(PDB)
4h13 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 116 0.88   57 - 177
2 43 1.71   11 - 56

Sequence


           ________________________________________50______________________________________________________________________________ 
 4ogq(D) : DVPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPAAGGAGGGTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIV-----aITDYGINAVCTHLGCVVPWNAAENKFKCPC 
         :                                                                                                                          
 4h13(D) : DVPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAV---tTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPC 
           ________________________________________50______________________________________________________________________________ 

           ___________________________________________________                                                                      
 4ogq(D) : HGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTSWTETDFRTGEEPWWS                                                                      
         :                                                                                                                          
 4h13(D) : HGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWWV                                                                      
           ___________________________________________________                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.1
Translation
(A)
-0.4
Closure
(%)
97.0
Bending Residues
( green )
  50 - 57
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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