D-Galactose-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Galactose-Binding Periplasmic Protein
  Conformer 1
(PDB)
2qw1 (A)
  Conformer 2
(PDB)
2fw0 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 153 0.21   113 - 255   295 - 304
2 148 0.19   4 - 112   256 - 294

Sequence


           ____________________________________________________________________________________________________________112_________ 
 2qw1(A) : DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGD 
         :                                                                                                                          
 2fw0(A) : DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGD 
           ____________________________________________________________________________________________________________112_________ 

           ________________________________________________________________________________________________________________________ 
 2qw1(A) : LIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEA 
         :                                                                                                                          
 2fw0(A) : LIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEA 
           ________________________________________________________________________________________________________________________ 

           ___________255____________________________________294____________                                                        
 2qw1(A) : LALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF                                                        
         :                                                                                                                          
 2fw0(A) : LALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF                                                        
           ___________255____________________________________294____________                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.5
Translation
(A)
0.1
Closure
(%)
71.8
Bending Residues
( green )
  112 - 113
  255 - 256
  294 - 295
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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