Diaminopimelate Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Diaminopimelate Epimerase
  Conformer 1
(PDB)
2q9j (A)
  Conformer 2
(PDB)
1gqz (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 162 0.25   76 - 79   106 - 263
2 107 0.5   3 - 75   80 - 105   264 - 272

Sequence


           _________________________________________________________________________75______________________100____________________ 
 2q9j(A) : MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQ-gNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 
         :                                                                                                                          
 1gqz(A) : MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 
           _________________________________________________________________________75______________________100____________________ 

           ________________________________________________________________________________________________________________________ 
 2q9j(A) : PIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQASGSGACAAVAVGIMQGLLNNNVQV 
         :                                                                                                                          
 1gqz(A) : PIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQV 
           ________________________________________________________________________________________________________________________ 

           ____________________263___________                                                                                       
 2q9j(A) : DLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL                                                                                       
         :                                                                                                                          
 1gqz(A) : DLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL                                                                                       
           ____________________263___________                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.7
Translation
(A)
0.2
Closure
(%)
99.2
Bending Residues
( green )
  75 - 80
  100 - 106
  263 - 264
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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