Dihydrodipicolinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Synthase
  Conformer 1
(PDB)
3m5v (B)
  Conformer 2
(PDB)
3ler (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 192 0.18   7 - 14   33 - 42   77 - 248   288 - 295
2 52 0.18   15 - 32   43 - 76
3 38 0.15   249 - 287

Sequence


           ____________14________________32________42________________________________76____________________________________________ 
 3m5v(B) : NAdKNIIIGAtALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLY 
         :                                                                                                                          
 3ler(B) : **DKNIIIGAtALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLY 
           ____________14________________32________42________________________________76____________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3m5v(B) : EHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEASGNIDKCVDLLAHEPRlISGEDAINYPILSNGGKGVISVTSNLLPDiSALTHFALDENYKEAKKINDELYNI 
         :                                                                                                                          
 3ler(B) : EHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGV-eASGNIDKCVDLLAHEPRlISGEDAINYPILSNGGKGVISVTSNLLPDiSALTHFALDENYKEAKKINDELYNI 
           ________________________________________________________________________________________________________________________ 

           246_____________________________________287__________                                                                    
 3m5v(B) : NKILFCESNPIPIKTAyLAGLIESLEFRLPLCSPSKENFAKIEEVkKYKIKGF                                                                    
         :                                                                                                                          
 3ler(B) : NKILFCESNPIPIKTAyLAGLIESLEFRLPLCSPSKENFAKIEEVkKYKIKGF                                                                    
           246_____________________________________287__________                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.1
Translation
(A)
0.0
Closure
(%)
92.9
Bending Residues
( green )
  14 - 15
  32 - 33
  42 - 43
  76 - 77
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
2.2
Translation
(A)
0.0
Closure
(%)
91.1
Bending Residues
( green )
  246 - 249
  287 - 288
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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