DNA Polymerase Beta (E.C.2.7.7.7)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Polymerase Beta (E.C.2.7.7.7)
  Conformer 1
(PDB)
2bpg (A)
  Conformer 2
(PDB)
1bpd  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 163 1.17   93 - 179   186 - 264
2 80 0.82   11 - 90
3 75 1.11   180 - 185   265 - 333

Sequence


           ____________________________________________________________________________86__________________________________________ 
 2bpg(A) : ETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKN 
         :                                                                                                                          
 1bpd    : ETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKN 
           ____________________________________________________________________________86__________________________________________ 

           ________________________________________________179___185_______________________________________________________________ 
 2bpg(A) : EDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENeYP 
         :                                                                                                                          
 1bpd    : EDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENeYP 
           ________________________________________________179___185_______________________________________________________________ 

           __________264_______________________________________________________________________                                     
 2bpg(A) : HRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQWRYREPKDRSE                                     
         :                                                                                                                          
 1bpd    : HRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQWRYREPKDRSE                                     
           __________264_______________________________________________________________________                                     

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
78.2
Translation
(A)
-0.2
Closure
(%)
93.8
Bending Residues
( green )
  86 - 93
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
22.3
Translation
(A)
-1.0
Closure
(%)
61.9
Bending Residues
( green )
  179 - 180
  185 - 186
  264 - 265
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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