Dual Specificity Mitogen-Activated Protein Kinase Kinase 6

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dual Specificity Mitogen-Activated Protein Kinase Kinase 6
  Conformer 1
(PDB)
3fme (A)
  Conformer 2
(PDB)
3enm (D)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 230 3.94   72 - 330
2 21 3.9   49 - 71

Sequence


           _________________________71_____________________________________________________________________________________________ 
 3fme(A) : **MEVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIR---nSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIV 
         :                                                                                                                          
 3enm(D) : ENFEVKADDLEPI-eLGRGAYGVVEK-rHVPSGQI-aVKRIRATVNSQEQKRLL-dLDIS-rTVDCPFTVTFYGALFREGDVWIC-eL-dTSLDKFYKQVIDKGQTIPEDILGKIAVSIV 
           _________________________71_____________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3fme(A) : KALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDF--aGC----KPYMAPERINPELNQ--ySVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTS 
         :                                                                                                                          
 3enm(D) : KALEHLHSKLSVIHRDVKPSNVLINALGQVK-cDFGISGYLVDDkPY-aPERINPELNQKGYSVKSDIWSLGIT-iELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTS 
           ________________________________________________________________________________________________________________________ 

           _________________________________________                                                                                
 3fme(A) : QCLKKNSKERPTYPELMQHPFFTLHESKGTDVASFVKLILG                                                                                
         :                                                                                                                          
 3enm(D) : QCLKKNSKERPTYPEL-qHPFFTLHESKGTDVASFVKLILA                                                                                
           _________________________________________                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
72.8
Translation
(A)
0.4
Closure
(%)
53.8
Bending Residues
( green )
  71 - 78
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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