Ferripyoverdine Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ferripyoverdine Receptor
  Conformer 1
(PDB)
2o5p (B)
  Conformer 2
(PDB)
2iah (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 678 1.76   116 - 813
2 70 0.79   46 - 115

Sequence


           _____________________________________________________________________115________________________________________________ 
 2o5p(B) : QEVEFDIPPQALGSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITELLRGTGASVDFQGNAITISVqLGTITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFG 
         :                                                                                                                          
 2iah(A) : QEVEFDIPPQALGSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITELLRGTGASVDFQGNAITISV--AtITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFG 
           _____________________________________________________________________115________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2o5p(B) : LNNIDDVMRHTPGITVSAYDTDRNNYYARGFSINNFQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNYRSELDVSGPL 
         :                                                                                                                          
 2iah(A) : LNNIDDVMRHTPGITVSAYDTDRNNYYARGFSINNFQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNYRSELDVSGPL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2o5p(B) : TESGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKIN 
         :                                                                                                                          
 2iah(A) : TESGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKIN 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2o5p(B) : GYHAPLGAIMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGSYMTARFNVTD 
         :                                                                                                                          
 2iah(A) : GYHAPLGAIMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGSYMTARFNVTD 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2o5p(B) : DLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFMPQDSWYRDSSNKLLEPDEGQNYEIGIKGEYLDGRLNTSLAYFEIHEENRAEEDALYNSKPTNPAITY 
         :                                                                                                                          
 2iah(A) : DLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFMPQDSWYRDSSNKLLEPDEGQNYEIGIKGEYLDGRLNTSLAYFEIHEENRAEEDALYNSKPTNPAITY 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2o5p(B) : AYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNV 
         :                                                                                                                          
 2iah(A) : AYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNV 
           ________________________________________________________________________________________________________________________ 

           __________________________________                                                                                       
 2o5p(B) : NNVFDKTYYTNIGFYTSASYGDPRNLMFSTRWDF                                                                                       
         :                                                                                                                          
 2iah(A) : NNVFDKTYYTNIGFYTSASYGDPRNLMFSTRWDF                                                                                       
           __________________________________                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
147.3
Translation
(A)
12.0
Closure
(%)
30.4
Bending Residues
( green )
  115 - 140
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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