Gamma-Aminobutyric Acid Type B Receptor Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma-Aminobutyric Acid Type B Receptor Subunit 1
  Conformer 1
(PDB)
4mqe (A)
  Conformer 2
(PDB)
4mr7 (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 206 0.19   53 - 152   159 - 171   315 - 415
2 189 0.28   153 - 158   172 - 314   416 - 455

Sequence


           ____________________________________________________________________________________________________150_____158_________ 
 4mqe(A) : SERRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFF 
         :                                                                                                                          
 4mr7(A) : SERRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFF 
           ____________________________________________________________________________________________________150_____158_________ 

           _171____________________________________________________________________________________________________________________ 
 4mqe(A) : RTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKIY 
         :                                                                                                                          
 4mr7(A) : RTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKIY 
           _171____________________________________________________________________________________________________________________ 

           ________________________314_______________________________________________________________________________________412___ 
 4mqe(A) : DPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTSrLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGS 
         :                                                                                                                          
 4mr7(A) : DPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTSrLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGS 
           ________________________314_______________________________________________________________________________________412___ 

           _________________________________________________                                                                        
 4mqe(A) : RMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADDYKDD                                                                        
         :                                                                                                                          
 4mr7(A) : RMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADDYK**                                                                        
           _________________________________________________                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.0
Translation
(A)
0.2
Closure
(%)
83.6
Bending Residues
( green )
  150 - 154
  158 - 159
  171 - 172
  314 - 315
  412 - 416
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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