Glucokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucokinase
  Conformer 1
(PDB)
1q18 (A)
  Conformer 2
(PDB)
1sz2 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 192 0.41   107 - 300
2 118 0.87   5 - 105   301 - 319

Sequence


           ___________________________________________________________________________________________________105__________________ 
 1q18(A) : TKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIACPITGDWVAtNHTWAFSIAEkKNLGFSHLEIINDFTAVSaIPlKKEHLIQFGGAEPV 
         :                                                                                                                          
 1sz2(A) : *KYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIACPITGDWVAtNHTWAFSIAEkKNLGFSHLEIINDFTAVSaIPlKKEHLIQFGGAEPV 
           ___________________________________________________________________________________________________105__________________ 

           ________________________________________________________________________________________________________________________ 
 1q18(A) : EGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALSLFCVIgRFGG 
         :                                                                                                                          
 1sz2(A) : EGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALSLFCVIgRFGG 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________300_____________________                                              
 1q18(A) : NLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLGSGAHLRQTLGHIL                                              
         :                                                                                                                          
 1sz2(A) : NLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLGSGAHLRQTLGHIL                                              
           ___________________________________________________300_____________________                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.2
Translation
(A)
-0.3
Closure
(%)
92.1
Bending Residues
( green )
  105 - 108
  300 - 301
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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