Glutamate Receptor 2, Linker, Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor 2, Linker, Glutamate Receptor 2
  Conformer 1
(PDB)
3tza (A)
  Conformer 2
(PDB)
1vso (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 158 1.18   4 - 108   110 - 111   179 - 186   191 - 192   196 - 199   205 - 209   214 - 253
2 80 1.01   109 - 109   112 - 178   187 - 190   193 - 195   200 - 204   210 - 213

Sequence


           ___________________________________________________________________________________________________________108__________ 
 3tza(A) : ANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPI 
         :                                                                                                                          
 1vso(A) : ***TLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQ------wNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTPI 
           ___________________________________________________________________________________________________________110__________ 

           _________________________________________________________178_____186_190__195_199__204__209_213_________________________ 
 3tza(A) : ESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKL 
         :                                                                                                                          
 1vso(A) : DSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSS---sALVKNSDEGIQRVLTTD--YALLMESTSIEYVTQRN-CNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQL 
           _________________________________________________________180_____186_190__195_199__203__208_212_________________________ 

           _____________________                                                                                                    
 3tza(A) : NEQGLLDKLKNKWWYDKGECG                                                                                                    
         :                                                                                                                          
 1vso(A) : QEEGKLHMMKEKWWRGNG***                                                                                                    
           _____________________                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.1
Translation
(A)
0.0
Closure
(%)
97.3
Bending Residues
( green )
  108 - 114
  178 - 179
  186 - 187
  190 - 193
  195 - 196
  199 - 200
  204 - 205
  209 - 210
  213 - 214
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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