Glutamate Receptor 2, Linker, Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor 2, Linker, Glutamate Receptor 2
  Conformer 1
(PDB)
3tza (A)
  Conformer 2
(PDB)
1ftj (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 152 0.76   3 - 107   210 - 256
2 102 0.45   108 - 209

Sequence


           __________________________________________________________________________________________________________107___________ 
 3tza(A) : ANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPI 
         :                                                                                                                          
 1ftj(B) : *NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPI 
           __________________________________________________________________________________________________________110___________ 

           _______________________________________________________________________________________208______________________________ 
 3tza(A) : ESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKL 
         :                                                                                                                          
 1ftj(B) : ESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKL 
           _______________________________________________________________________________________211______________________________ 

           _____________________                                                                                                    
 3tza(A) : NEQGLLDKLKNKWWYDKGECG                                                                                                    
         :                                                                                                                          
 1ftj(B) : NEQGLLDKLKNKWWYDKGEC*                                                                                                    
           _____________________                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.3
Translation
(A)
-0.1
Closure
(%)
96.1
Bending Residues
( green )
  107 - 108
  208 - 214
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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