Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 1
  Conformer 1
(PDB)
2f36 (B)
  Conformer 2
(PDB)
4h8i (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 149 0.49   7 - 110   191 - 194   208 - 210   213 - 250
2 95 0.85   111 - 190   195 - 207   211 - 212

Sequence


           __________________________________________________________________________________________________________110___________ 
 2f36(B) : **TLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQND-KGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTPID 
         :                                                                                                                          
 4h8i(A) : NRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKGTPID 
           __________________________________________________________________________________________________________111___________ 

           __________________________________________________________________190_194__________207__________________________________ 
 2f36(B) : SADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEG 
         :                                                                                                                          
 4h8i(A) : SADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEG 
           __________________________________________________________________191_195__________208__________________________________ 

           ________________                                                                                                         
 2f36(B) : KLHMMKEKWWR*****                                                                                                         
         :                                                                                                                          
 4h8i(A) : KLHMMKEKWWRGNGCP                                                                                                         
           ________________                                                                                                         

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.3
Translation
(A)
0.3
Closure
(%)
99.4
Bending Residues
( green )
  110 - 111
  190 - 191
  194 - 195
  207 - 208
  210 - 214
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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