Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 1
  Conformer 1
(PDB)
2f36 (A)
  Conformer 2
(PDB)
4li7 (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 31 8.75   191 - 221
2 31 8.33   222 - 252

Sequence


           ________________________________________________________________________________________________________________________ 
 2f36(A) : TLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTPIDSAD 
         :                                                                                                                          
 4li7(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________221_______________________ 
 2f36(A) : DLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLH 
         :                                                                                                                          
 4li7(A) : *************************************************************GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFC 
           _____________________________________________________________________________________________1140_______________________ 

           ________________________________________________________________________________________________________________________ 
 2f36(A) : MMKEKWWRGNGCPS********************************************************************************************************** 
         :                                                                                                                          
 4li7(A) : HRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAgMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGRyAEYV 
           ________________________________________________________________________________________________________________________ 

           ______________________                                                                                                   
 2f36(A) : **********************                                                                                                   
         :                                                                                                                          
 4li7(A) : IYRGEQAYPEYLITYQIMKPEA                                                                                                   
           ______________________                                                                                                   

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
44.4
Translation
(A)
-2.8
Closure
(%)
83.4
Bending Residues
( green )
  221 - 222
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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