Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 1
  Conformer 1
(PDB)
2f36 (A)
  Conformer 2
(PDB)
3t9v (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 146 1.29   7 - 108   193 - 195   213 - 253
2 101 1.41   109 - 192   196 - 212

Sequence


           _______________________________________________________________________________________________________108______________ 
 2f36(A) : *TLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQN-DKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTPIDS 
         :                                                                                                                          
 3t9v(B) : KTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGCRDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIES 
           _______________________________________________________________________________________________________109______________ 

           _____________________________________________________________________192__________________212___________________________ 
 2f36(A) : ADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTD--YALLMESTSIEYVTQRN-CNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQE 
         :                                                                                                                          
 3t9v(B) : AEDLSKQTEIAYGTLDCGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNE 
           _____________________________________________________________________195__________________216___________________________ 

           ____________________                                                                                                     
 2f36(A) : EGKLHMMKEKWWRGNG-CPS                                                                                                     
         :                                                                                                                          
 3t9v(B) : QGLLDKLKNKWWYDKGEC**                                                                                                     
           ____________________                                                                                                     

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
26.3
Translation
(A)
0.5
Closure
(%)
87.3
Bending Residues
( green )
  108 - 109
  192 - 193
  195 - 196
  212 - 213
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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