6-Phosphogluconate Dehydrogenase, Decarboxylating

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 6-Phosphogluconate Dehydrogenase, Decarboxylating
  Conformer 1
(PDB)
3fwn (B)
  Conformer 2
(PDB)
2zyd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 327 0.62   103 - 110   125 - 127   138 - 145   154 - 157   161 - 464
2 133 0.8   5 - 102   111 - 124   128 - 137   146 - 153   158 - 160

Sequence


           __________________________________________________________________________________________________102_____110___________ 
 3fwn(B) : SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 
         :                                                                                                                          
 2zyd(A) : *KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 
           __________________________________________________________________________________________________102_____110___________ 

           124__________137_____145_____153_157____________________________________________________________________________________ 
 3fwn(B) : FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTK 
         :                                                                                                                          
 2zyd(A) : FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTK 
           124__________137_____145_____153_157____________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3fwn(B) : KDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFR 
         :                                                                                                                          
 2zyd(A) : KDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFR 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________________              
 3fwn(B) : AGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQIGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD              
         :                                                                                                                          
 2zyd(A) : AGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW**              
           ___________________________________________________________________________________________________________              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.5
Translation
(A)
0.4
Closure
(%)
99.9
Bending Residues
( green )
  102 - 103
  110 - 111
  124 - 125
  127 - 128
  137 - 138
  145 - 146
  153 - 154
  157 - 158
  160 - 161
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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