Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1efc (A)
  Conformer 2
(PDB)
2wrq (Z)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 190 2.74   94 - 97   206 - 391
2 169 4.25   10 - 93   98 - 205

Sequence


           ___________________________________________________________________________________92___________________________________ 
 1efc(A) : TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGV 
         :                                                                                                                          
 2wrq(Z) : TKPHVNVGTIGHVDHGKTTLTAALTYVAAA------------EN-PN----------VhVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 
           ___________________________________________________________________________________93___________________________________ 

           _____________________________________________________________________________________205________________________________ 
 1efc(A) : PYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE----------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIK 
         :                                                                                                                          
 2wrq(Z) : PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVK 
           _____________________________________________________________________________________216________________________________ 

           ________________________________________________________________________________________________________________________ 
 1efc(A) : VGEEVEIVGIK-ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNI 
         :                                                                                                                          
 2wrq(Z) : VGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNV 
           ________________________________________________________________________________________________________________________ 

           _____________________________________                                                                                    
 1efc(A) : KMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS                                                                                    
         :                                                                                                                          
 2wrq(Z) : TFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                                    
           _____________________________________                                                                                    

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
90.7
Translation
(A)
-0.7
Closure
(%)
89.2
Bending Residues
( green )
  92 - 98
  205 - 206
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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