Phosphoenolpyruvate Carboxykinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoenolpyruvate Carboxykinase
  Conformer 1
(PDB) 		1oen  
  Conformer 2
(PDB) 		1os1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 360 0.93   8 - 90   93 - 236   253 - 258   261 - 357   407 - 436
2 160 2.14   91 - 92   237 - 252   259 - 260   358 - 406   437 - 538

Sequence


           _____________________________________________________________________________________90_________________________________ 
 1oen    : **GLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDA 
         :                                                                                                                          
 1os1(A) : NNGLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDA 
           _____________________________________________________________________________________90_________________________________ 

           ______________________________________________________________________________________________________________236_______ 
 1oen    : FCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEAGDV 
         :                                                                                                                          
 1os1(A) : FCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDV 
           ______________________________________________________________________________________________________________236_______ 

           ______252______________________________________________________________________________________________________357______ 
 1oen    : AVFFGLSGSGKTTLSTDPARRLIGDDEHGWDDDGVFNFEGGSYAKTIKLSKEAEPEIYAAIRRDALLENVTVRAGGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTAD 
         :                                                                                                                          
 1os1(A) : AVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTAD 
           ______252______________________________________________________________________________________________________357______ 

           ________________________________________406__________________________435________________________________________________ 
 1oen    : AFGVLPPVSRLTADQTQYHFLSGFTAAAA--------pTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISAADTRAIIDAILNGSLDNAETFTLPMFNLAIP 
         :                                                                                                                          
 1os1(A) : AFGVLPPVSRLTADQTQYHFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLAIP 
           ________________________________________406__________________________435________________________________________________ 

           _________________________________________________________                                                                
 1oen    : TELPGVDTGILDPRNTYaG---WQEKAETLAKLFIDNFDKYTDTPAGAALVAAGPAL                                                                
         :                                                                                                                          
 1os1(A) : TELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGAALVAAGPKL                                                                
           _________________________________________________________                                                                

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.7
Translation
(A) 		0.1
Closure
(%) 		98.8
Bending Residues
( green ) 		  90 - 93
  236 - 237
  252 - 253
  255 - 265
  357 - 358
  406 - 407
  435 - 437
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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