Endothiapepsin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endothiapepsin
  Conformer 1
(PDB) 		4ape  
  Conformer 2
(PDB) 		4er2 (E)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 211 0.45   2 - 184A   212 - 223   271 - 272   303 - 314
2 111 0.54   185 - 211   224 - 270   273 - 302   315 - 322

Sequence


           ________________________________________________________________________________________________________________________ 
 4ape    : STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDS 
         :                                                                                                                          
 4er2(E) : STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDS 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________184A_______________________211_________223_____________ 
 4ape    : TIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVS 
         :                                                                                                                          
 4er2(E) : TIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVS 
           _________________________________________________________________184A_______________________211_________223_____________ 

           ________________________________270___________________________302_________314_____________                               
 4ape    : GAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK                               
         :                                                                                                                          
 4er2(E) : GAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK                               
           ________________________________270___________________________302_________314_____________                               

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.9
Translation
(A) 		0.0
Closure
(%) 		8.1
Bending Residues
( green ) 		  184A - 185
  211 - 212
  223 - 224
  270 - 275
  302 - 303
  314 - 319
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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