Actin, Alpha Skeletal Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Alpha Skeletal Muscle
  Conformer 1
(PDB)
2pav (A)
  Conformer 2
(PDB)
1nwk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 198 0.51   142 - 144   146 - 340
2 151 0.92   8 - 141   145 - 145   341 - 369

Sequence


           ________________________________________________________________________________________________________________________ 
 2pav(A) : TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQdSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYV 
         :                                                                                                                          
 1nwk(A) : *TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR---sYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYV 
           ________________________________________________________________________________________________________________________ 

           ____141_________________________________________________________________________________________________________________ 
 2pav(A) : AIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNER 
         :                                                                                                                          
 1nwk(A) : AIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNER 
           ____141_________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________340__________________________________ 
 2pav(A) : FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKC 
         :                                                                                                                          
 1nwk(A) : FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH*** 
           ___________________________________________________________________________________340__________________________________ 

           _                                                                                                                        
 2pav(A) : F                                                                                                                        
         :                                                                                                                          
 1nwk(A) : *                                                                                                                        
           _                                                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.7
Translation
(A)
-0.3
Closure
(%)
29.6
Bending Residues
( green )
  141 - 146
  340 - 341
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download