Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin
  Conformer 1
(PDB)
3hbt (A)
  Conformer 2
(PDB)
3lue (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 139 1.51   7 - 33   68 - 143   336 - 372
2 22 0.88   35 - 67
3 192 1.07   144 - 335

Sequence


           _____________________________32_________________________________67______________________________________________________ 
 3hbt(A) : ***TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR-----------dSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 
         :                                                                                                                          
 3lue(A) : DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSiVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYpIEhgIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 
           _____________________________32_________________________________67______________________________________________________ 

           ___________________143__________________________________________________________________________________________________ 
 3hbt(A) : IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 
         :                                                                                                                          
 3lue(A) : IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 
           ___________________143__________________________________________________________________________________________________ 

           __________________________________________________________________________________________334___________________________ 
 3hbt(A) : LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQE 
         :                                                                                                                          
 3lue(A) : LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERkYSVWIGGSILASLSTFQQMWISKQE 
           __________________________________________________________________________________________334___________________________ 

           ______________                                                                                                           
 3hbt(A) : YDEAGPSIVHRKCF                                                                                                           
         :                                                                                                                          
 3lue(A) : YDESGPSIVHRKCF                                                                                                           
           ______________                                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
69.6
Translation
(A)
-4.6
Closure
(%)
62.0
Bending Residues
( green )
  32 - 35
  67 - 71
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
30.2
Translation
(A)
0.9
Closure
(%)
51.6
Bending Residues
( green )
  143 - 147
  334 - 337
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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