Adenylate Kinase Isoenzyme-3 (Gtp: Amp Phosphotransferase) 3 (E.C.2.7.4.10)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase Isoenzyme-3 (Gtp: Amp Phosphotransferase) 3 (E.C.2.7.4.10)
  Conformer 1
(PDB)
2ak3 (A)
  Conformer 2
(PDB)
1aky  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 24 1.28   119 - 124   161 - 175   179 - 181
2 135 2.6   6 - 118   176 - 178   182 - 203
3 36 1.01   125 - 160

Sequence


           ________________________________________________________________________________________________________________________ 
 2ak3(A) : GASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKN--LTQYNWLLDGFPRTLPQAEALDRAYQ-----IDTVINL 
         :                                                                                                                          
 1aky    : ****ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIEL 
           ________________________________________________________________________________________________________________________ 

           ___118___124_______________________________158______________175___181____________________________________________        
 2ak3(A) : NVPFEVIKQRLTARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTETNKIWPHVYAFLQTKLPQRSQETSVTP        
         :                                                                                                                          
 1aky    : KVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGI---WAGVDASQPPATVWADILNKLGKN********        
           ___124___130_______________________________164______________181___187____________________________________________        

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.7
Translation
(A)
-0.3
Closure
(%)
100.0
Bending Residues
( green )
  118 - 119
  175 - 176
  178 - 179
  181 - 182
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
67.9
Translation
(A)
-1.2
Closure
(%)
95.6
Bending Residues
( green )
  124 - 126
  158 - 161
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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