Adenylosuccinate Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylosuccinate Synthetase
  Conformer 1
(PDB)
1j4b (A)
  Conformer 2
(PDB)
1iwe (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 246 1.24   30 - 35   44 - 47   55 - 60   66 - 258   260 - 264   267 - 271   276 - 294   303 - 305   355 - 357   449 - 450
2 180 0.86   36 - 43   48 - 54   61 - 65   259 - 259   265 - 266   272 - 275   295 - 302   306 - 354   358 - 448   451 - 455

Sequence


           ________35______43__47_____54____60__64_________________________________________________________________________________ 
 1j4b(A) : AAATGSRVTVVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVD 
         :                                                                                                                          
 1iwe(A) : **ATGSRVTVVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVD 
           ________35______43__47_____54____60__64_________________________________________________________________________________ 

           ______________________________________________________________________________________________________________258___264_ 
 1j4b(A) : GLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQHQSMFPTLEIDVEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGANAALLDIDFG 
         :                                                                                                                          
 1iwe(A) : GLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQHQSMFPTLEIDVEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGANAALLDIDFG 
           ______________________________________________________________________________________________________________258___264_ 

           ___271_275________________294_____302_________________________________________________354_______________________________ 
 1j4b(A) : TYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGDLLQNRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLSEIKVGISYKLNGKR 
         :                                                                                                                          
 1iwe(A) : TYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGDLLQNRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLSEIKVGISYKLNGKR 
           ___271_275________________294_____302_________________________________________________354_______________________________ 

           ____________________________________________________________448_________                                                 
 1j4b(A) : IPYFPANQEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYVRFVENHMGVAVKWVGVGKSRESMIQLF                                                 
         :                                                                                                                          
 1iwe(A) : IPYFPANQEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYVRFVENHMGVAVKWVGVGKSRESMIQLF                                                 
           ____________________________________________________________448_________                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.8
Translation
(A)
-0.2
Closure
(%)
100.0
Bending Residues
( green )
  35 - 36
  43 - 44
  47 - 48
  54 - 55
  60 - 61
  64 - 70
  258 - 260
  264 - 267
  271 - 272
  275 - 276
  294 - 295
  302 - 303
  305 - 306
  354 - 355
  357 - 358
  448 - 451
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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