Aspartate-Semialdehyde Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate-Semialdehyde Dehydrogenase
  Conformer 1
(PDB)
1gl3 (A)
  Conformer 2
(PDB)
1brm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 204 0.74   132 - 246   252 - 257   260 - 353
2 148 0.81   3 - 131   247 - 251   258 - 259   354 - 365

Sequence


           ________________________________________________________________________________________________________________________ 
 1gl3(A) : MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT 
         :                                                                                                                          
 1brm(A) : MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT 
           ________________________________________________________________________________________________________________________ 

           ________131_____________________________________________________________________________________________________________ 
 1gl3(A) : DGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSR 
         :                                                                                                                          
 1brm(A) : DGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWID--------- 
           ________131_____________________________________________________________________________________________________________ 

           __245___251___257_____________________________________________________________________________________________353_______ 
 1gl3(A) : EEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLR 
         :                                                                                                                          
 1brm(A) : --wKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLR 
           __245___251___257_____________________________________________________________________________________________353_______ 

           _______                                                                                                                  
 1gl3(A) : RMLRQLA                                                                                                                  
         :                                                                                                                          
 1brm(A) : RMLRQLA                                                                                                                  
           _______                                                                                                                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.7
Translation
(A)
0.0
Closure
(%)
100.0
Bending Residues
( green )
  131 - 136
  245 - 249
  251 - 252
  257 - 260
  353 - 354
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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