Aspartate Aminotransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Aminotransferase
  Conformer 1
(PDB)
1oxo (A)
  Conformer 2
(PDB)
1oxp  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 286 0.43   40 - 328   358 - 360
2 99 0.77   17 - 39   329 - 357   361 - 408

Sequence


           ____________________________32__________________________________________________________________________________________ 
 1oxo(A) : SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 
         :                                                                                                                          
 1oxp    : SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 
           ____________________________32__________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1oxo(A) : KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 
         :                                                                                                                          
 1oxp    : KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________326____________________________357___________ 
 1oxo(A) : DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 
         :                                                                                                                          
 1oxp    : DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 
           ___________________________________________________________________________326____________________________357___________ 

           _________________________________________                                                                                
 1oxo(A) : QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK                                                                                
         :                                                                                                                          
 1oxp    : QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK                                                                                
           _________________________________________                                                                                

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.5
Translation
(A)
-0.4
Closure
(%)
100.0
Bending Residues
( green )
  32 - 41
  326 - 329
  357 - 361
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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