Aspartyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartyl-Trna Synthetase
  Conformer 1
(PDB)
1l0w (B)
  Conformer 2
(PDB)
1g51 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 364 1.11   1004 - 1275   1284 - 1287   1292 - 1297   1417 - 1421   1447 - 1447   1468 - 1469   1472 - 1475   1479 - 1479   1481 - 1483   1511 - 1576
2 209 1.41   1276 - 1283   1288 - 1291   1298 - 1416   1422 - 1446   1448 - 1467   1470 - 1471   1476 - 1478   1480 - 1480   1484 - 1510

Sequence


           ________________________________________________________________________________________________________________________ 
 1l0w(B) : MRRTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEK 
         :                                                                                                                          
 1g51(A) : MRRTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1l0w(B) : EASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDL 
         :                                                                                                                          
 1g51(A) : EASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDL 
           ________________________________________________________________________________________________________________________ 

           _______________________________1275____1283____1291__1297_______________________________________________________________ 
 1l0w(B) : EMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFS 
         :                                                                                                                          
 1g51(A) : EMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFS 
           ________________________________275_____283_____291___297_______________________________________________________________ 

           ____________________________________________________1416_1421_____________________1446_________________1467____1475____1 
 1l0w(B) : GGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGG 
         :                                                                                                                          
 1g51(A) : GGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGG 
           _____________________________________________________416__421______________________446__________________467_____475_____ 

           483_______________________1510______________________________________________________________________                     
 1l0w(B) : SIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQLRELGLMVVRP                     
         :                                                                                                                          
 1g51(A) : SIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQLRELGLMVVRP                     
           483________________________510______________________________________________________________________                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.5
Translation
(A)
0.6
Closure
(%)
96.2
Bending Residues
( green )
  1275 - 1276
  1283 - 1288
  1291 - 1292
  1297 - 1298
  1416 - 1417
  1421 - 1422
  1446 - 1448
  1467 - 1472
  1475 - 1476
  1478 - 1481
  1483 - 1484
  1510 - 1511
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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