Atp-Citrate Lyase Alpha-Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Citrate Lyase Alpha-Subunit
  Conformer 1
(PDB)
6qcl (A)
  Conformer 2
(PDB)
6hxn (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 140 0.44   354 - 400   405 - 453   553 - 555   565 - 605
2 70 0.44   401 - 404   454 - 552   556 - 564

Sequence


           _______________________________________________400_404_______________________________________446________________________ 
 6qcl(A) : VEPLIRTTISDDRGEEPRYAGYAASELCSKGYGIEDVIGLLWNKKLPTREESEIIKRIVMISADHGPAVSGAFGSILAACAGIDMPQAVSAGMTMIGPRFGGAVTNAGKYFKMAVEDYPN 
         :                                                                                                                          
 6hxn(A) : *EPLIRTTISDDRGEEPRYAGYAASELCSKGYGIEDVIGLLWNKKLPTREESEIIKRIVMISADHGPAVSGAFGSILAACAGIDMPQAVSAGMTMIGPRFGGAVTNAGKYFKMAVEDYPN 
           _______________________________________________400_404_______________________________________446________________________ 

           _______________________________________________________________________________552________563___________________________ 
 6qcl(A) : ----------------------------pDQRVKYLVSYIKNETSLHTPCLDYALE--------------nVDGTIGCILMDLDFPVHSLNGFFVLARTIGMIGHWIDQNNQNSRLIRLY 
         :                                                                                                                          
 6hxn(A) : DIPGFLSWMKKNVGPVPGIGHRVKSVKNPDQRVKYLVSYIKNETSLHTPCLDYALEVEKVTTAKKGNLILNVDGTIGCILMDLDFPVHSLNGFFVLARTIGMIGHWIDQNNQNSRLIRLY 
           _______________________________________________________________________________552________563___________________________ 

           _________________                                                                                                        
 6qcl(A) : DYLINYAVKPEQEVPEK                                                                                                        
         :                                                                                                                          
 6hxn(A) : DYLINYAVKPEQEVPEK                                                                                                        
           _________________                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.2
Translation
(A)
-0.2
Closure
(%)
98.6
Bending Residues
( green )
  400 - 401
  404 - 405
  446 - 454
  552 - 553
  555 - 556
  563 - 565
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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