Atp-Dependent RNA Helicase Ddx3x

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent RNA Helicase Ddx3x
  Conformer 1
(PDB)
4pxa (A)
  Conformer 2
(PDB)
2i4i (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 239 2.07   169 - 411
2 161 1.53   412 - 574

Sequence


           ________________________________________________________________________________________________________________________ 
 4pxa(A) : DWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 
         :                                                                                                                          
 2i4i(A) : ********************************MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4pxa(A) : KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLVMGFEPQIRRIVEQDTMPPKG 
         :                                                                                                                          
 2i4i(A) : KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKG 
           ________________________________________________________________________________________________________________________ 

           ___________________________404__________________________________________________________________________________________ 
 4pxa(A) : VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 
         :                                                                                                                          
 2i4i(A) : VRHTMMFSATFPKEIQMLARDFLDEYIFLAVG----tSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 
           ___________________________404__________________________________________________________________________________________ 

           ______________________________________________________________________________________                                   
 4pxa(A) : LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAY****                                   
         :                                                                                                                          
 2i4i(A) : LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR--nLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHY                                   
           ______________________________________________________________________________________                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
180.0
Translation
(A)
5.5
Closure
(%)
38.8
Bending Residues
( green )
  404 - 413
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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