Atp-Dependent Clp Protease Atp-Binding Subunit Clpx

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Clp Protease Atp-Binding Subunit Clpx
  Conformer 1
(PDB)
3hws (A)
  Conformer 2
(PDB)
3hws (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 209 1.2   65 - 318
2 93 0.26   319 - 411

Sequence


           ________________________________________________________________________________________________________________________ 
 3hws(A) : *ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIV 
         :                                                                                                                          
 3hws(B) : SALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIV 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________________318_______ 
 3hws(A) : YIDQIDKISRKSDNPrDVSGEGVQQALLKLIEGT-------fLQVDTSKILFICGGAFAGLDKVISHRVETGSdKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQI 
         :                                                                                                                          
 3hws(B) : YIDQIDKISR----------eGVQQALLKLIEGTrKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVET----aSEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQI 
           ______________________________________________________________________________________________________________318_______ 

           _________________________________________________________________________________________                                
 3hws(A) : LKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIY*                                
         :                                                                                                                          
 3hws(B) : LKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIYG                                
           _________________________________________________________________________________________                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.7
Translation
(A)
-0.6
Closure
(%)
82.7
Bending Residues
( green )
  318 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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