Atp-Dependent Clp Protease Atp-Binding Subunit Clpx

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Clp Protease Atp-Binding Subunit Clpx
  Conformer 1
(PDB)
3hws (A)
  Conformer 2
(PDB)
3hte (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 198 0.95   66 - 317
2 94 0.28   318 - 411

Sequence


           ________________________________________________________________________________________________________________________ 
 3hws(A) : ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 
         :                                                                                                                          
 3hte(E) : *LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG--sNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT--gYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________317________________ 
 3hws(A) : IDQIDKISRKSDNPrDVSGEGVQQALLKLIEGTfLQVDTSKILFICGGAFAGLDKVISHRVETGSdKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNAL 
         :                                                                                                                          
 3hte(E) : IDQIDKISR---------gEGVQQALLKLIEGT----dTSKILFICGGAFAGLDKVISHRVE------sEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNAL 
           _____________________________________________________________________________________________________317________________ 

           ______________________________________________________________________________________                                   
 3hws(A) : TKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIY******                                   
         :                                                                                                                          
 3hte(E) : TKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ                                   
           ______________________________________________________________________________________                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.0
Translation
(A)
-0.1
Closure
(%)
99.5
Bending Residues
( green )
  317 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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