Bacteriophage T7 RNA Polymerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bacteriophage T7 RNA Polymerase
  Conformer 1
(PDB)
1qln (A)
  Conformer 2
(PDB)
1aro (P)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 546 1.84   12 - 543   710 - 710   712 - 725   728 - 733   735 - 771   784 - 808   816 - 822   853 - 855
2 212 1.85   544 - 709   711 - 711   726 - 727   734 - 734   772 - 783   809 - 815   823 - 852   861 - 875

Sequence


           ________________________________________________________________________________________________________________________ 
 1qln(A) : IAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFp---LITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQAVA 
         :                                                                                                                          
 1aro(P) : **KNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLliTTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQAVA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1qln(A) : SAIGRAIEDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPEYAEAIATRA 
         :                                                                                                                          
 1aro(P) : SAIGRAIEDEARFGRIRDLEAKHFKK-----------------fMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQN-------sETIELAPEYAEAIATRA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1qln(A) : GALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWK 
         :                                                                                                                          
 1aro(P) : GALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW---------------------------------- 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1qln(A) : RAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLE 
         :                                                                                                                          
 1aro(P) : -----vYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLE 
           ________________________________________________________________________________________________________________________ 

           __________________________________________543___________________________________________________________________________ 
 1qln(A) : NTWWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAG 
         :                                                                                                                          
 1aro(P) : NTWWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAING----------------------gTKALAG 
           __________________________________________543___________________________________________________________________________ 

           ________________________________________________________________________________________709_____________725_____733_____ 
 1qln(A) : QWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQE 
         :                                                                                                                          
 1aro(P) : QWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRSAVHWVTPDGFPVWQE 
           ________________________________________________________________________________________709_____________725_____733_____ 

           ______________________________771_________783______________________808___________822_________________________850________ 
 1qln(A) : YKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQL 
         :                                                                                                                          
 1aro(P) : YKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESSDVLADFYDQFADQLHESQL 
           ______________________________771_________783______________________808___________822_________________________850________ 

           _________________________                                                                                                
 1qln(A) : DKMPALPAKGNLNLRDILESDFAFA                                                                                                
         :                                                                                                                          
 1aro(P) : DKMPALPAKGNLNLRDILESD****                                                                                                
           _________________________                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.1
Translation
(A)
0.1
Closure
(%)
96.1
Bending Residues
( green )
  543 - 544
  709 - 722
  725 - 728
  733 - 735
  771 - 772
  783 - 784
  808 - 816
  822 - 823
  850 - 863
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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