Bifunctional P-450/nadph-P450 Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bifunctional P-450/nadph-P450 Reductase
  Conformer 1
(PDB)
4kf2 (A)
  Conformer 2
(PDB)
5e9z (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 390 0.5   5 - 174   220 - 221   232 - 259   265 - 454
2 50 1.02   175 - 219   222 - 231   260 - 264

Sequence


           ________________________________________________________________________________________________________________________ 
 4kf2(A) : KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFFGDGLVTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDI 
         :                                                                                                                          
 5e9z(D) : KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGLVTRYLSSQRLIKEACDGSRFDKNLSQALKFVRDIAGDGLVTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDI 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________174________________________________________219_______231_______________ 
 4kf2(A) : AVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRAdDPAYDENKRQFQEDIKVMNDLVDKIIADRKASqSDDLLTHMLNGKDPETG 
         :                                                                                                                          
 5e9z(D) : AVQLVQKWERLNADEHIEVPGDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKQQ-----aCDENKRQFQEDIKVMNDLVDKIIADRKA-qSDDLLTHMLNGKDPETG 
           _________________________________________________174________________________________________219_______231_______________ 

           __________259__264______________________________________________________________________________________________________ 
 4kf2(A) : EPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTI 
         :                                                                                                                          
 5e9z(D) : EPLDDENIRYQIITFLIAGHVTTSGLLSFALYFLVKNPYVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTI 
           __________259__264______________________________________________________________________________________________________ 

           ___________________________________________________________________________________________                              
 4kf2(A) : WGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPLGG                              
         :                                                                                                                          
 5e9z(D) : WGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLSMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPLG*                              
           ___________________________________________________________________________________________                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.5
Translation
(A)
0.4
Closure
(%)
60.2
Bending Residues
( green )
  174 - 175
  219 - 222
  231 - 232
  259 - 260
  264 - 265
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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