Calcium/calmodulin-Dependent Protein Kinase Type II Gamma Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calcium/calmodulin-Dependent Protein Kinase Type II Gamma Chain
  Conformer 1
(PDB)
2v7o (A)
  Conformer 2
(PDB)
2vn9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 210 0.44   65 - 70   72 - 72   93 - 155   160 - 299
2 78 0.81   11 - 64   71 - 71   73 - 92   156 - 159

Sequence


           __________________________________________________________________64____70____________________92________________________ 
 2v7o(A) : TENLYFQmATCTRFTDDYQLFEELGKG-fSVVRRCVKKTPTQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHC 
         :                                                                                                                          
 2vn9(A) : ************SMTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHC 
           __________________________________________________________________64____70____________________92________________________ 

           ____________________________________155_159_____________________________________________________________________________ 
 2v7o(A) : IHQILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSP 
         :                                                                                                                          
 2vn9(A) : IQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSP 
           ____________________________________155_159_____________________________________________________________________________ 

           _________________________________________________________________________                                                
 2v7o(A) : EWDTVTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKLKG*******                                                
         :                                                                                                                          
 2vn9(A) : EWDTVTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKLKGAILTTML                                                
           _________________________________________________________________________                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.2
Translation
(A)
0.0
Closure
(%)
7.4
Bending Residues
( green )
  64 - 65
  70 - 73
  92 - 93
  155 - 156
  159 - 160
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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