Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
1niw (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 64 0.87   5 - 70
2 62 1.58   77 - 143

Sequence


           __________________________________________________________________69____________________________________________________ 
 5k8q(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKsEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 
         :                                                                                                                          
 1niw(E) : *QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTV-rSLGQNPTEAELQD-iNEVDADGNGTIDFPEFLTaRKkDTDSEEEIREAFRVFDKDGNGYISAAELRHV-tNLGEKLTDEEVDE- 
           __________________________________________________________________69____________________________________________________ 

           _______________________                                                                                                  
 5k8q(A) : IREADIDGDGQVNYEEFVQMMTA                                                                                                  
         :                                                                                                                          
 1niw(E) : iREADIDGDGQVNYEEFVQtA**                                                                                                  
           _______________________                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
171.2
Translation
(A)
0.4
Closure
(%)
90.7
Bending Residues
( green )
  69 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download