Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB) 		5k8q (A)
  Conformer 2
(PDB) 		6hr1 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 70 2.75   69 - 145
2 65 0.67   4 - 68

Sequence


           ________________________________________________________________________________________________________________________ 
 5k8q(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 6hr1(B) : GPHMARWKKAFIAVSAANRFKKISSEEEKRKREEEEVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFlQCFARYPDHMKQHDFFKSA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5k8q(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 6hr1(B) : MPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSYQSAL 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________67________________________________ 
 5k8q(A) : **********************DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKsEEEIREAFRVFDKDGNGYISA 
         :                                                                                                                          
 6hr1(B) : SKDPNEKRDHMVLLEFVTAAGITLlTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMM----dSEEEIREAFRVFDKDGNGYISA 
           _____________________________________________________________________________________319________________________________ 

           _____________________________________________                                                                            
 5k8q(A) : AELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA                                                                            
         :                                                                                                                          
 6hr1(B) : AELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA                                                                            
           _____________________________________________                                                                            

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		167.7
Translation
(A) 		-0.1
Closure
(%) 		79.3
Bending Residues
( green ) 		  67 - 77
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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