Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
4jpz (I)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 25 1.39   83 - 100   130 - 136
2 69 1.11   8 - 76
3 38 2.85   101 - 129   137 - 145

Sequence


           _________________________________________________________________________76_____________________100_____________________ 
 5k8q(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK---sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 
         :                                                                                                                          
 4jpz(I) : ****EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 
           _________________________________________________________________________77_____________________101_____________________ 

           _____129____136____________                                                                                              
 5k8q(A) : DEMIREADIDGDGQVNYEEFVQMMTA*                                                                                              
         :                                                                                                                          
 4jpz(I) : DEMIREADIDGDGQVNYEEFVQMMTAK                                                                                              
           _____130____137____________                                                                                              

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
143.4
Translation
(A)
-5.0
Closure
(%)
55.7
Bending Residues
( green )
  76 - 84
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
39.0
Translation
(A)
1.2
Closure
(%)
94.6
Bending Residues
( green )
  100 - 101
  129 - 130
  136 - 137
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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