Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit
  Conformer 1
(PDB)
1j3h (B)
  Conformer 2
(PDB)
1bkx (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 233 0.91   14 - 33   91 - 105   123 - 322
2 89 1.62   34 - 90   106 - 122   323 - 348

Sequence


           _____________________33_______________________________________________________90____________105______________122________ 
 1j3h(B) : EQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS 
         :                                                                                                                          
 1bkx(A) : *QESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS 
           _____________________33_______________________________________________________90____________105______________122________ 

           ________________________________________________________________________________________________________________________ 
 1j3h(B) : HLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWl-gTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 
         :                                                                                                                          
 1bkx(A) : HLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWlCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________316_________________________________                       
 1j3h(B) : SGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDT----------iRViNEKCGKEFTEF                       
         :                                                                                                                          
 1bkx(A) : SGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRViNEKCGKEFTEF                       
           ______________________________________________________________316_________________________________                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.1
Translation
(A)
0.5
Closure
(%)
97.4
Bending Residues
( green )
  33 - 34
  90 - 91
  105 - 106
  122 - 123
  316 - 336
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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