Carboxyl-Terminal Src Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Carboxyl-Terminal Src Kinase
  Conformer 1
(PDB)
1k9a (C)
  Conformer 2
(PDB)
1k9a (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 326 2.64   8 - 79   176 - 203   210 - 222   229 - 448
2 108 3.2   80 - 175   204 - 209   223 - 228

Sequence


           ________________________________________________________________________79______________________________________________ 
 1k9a(C) : ASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGK 
         :                                                                                                                          
 1k9a(A) : ASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGK 
           ________________________________________________________________________79______________________________________________ 

           ______________________________________________174_______________________200_____________________________________________ 
 1k9a(C) : VEHYRIMYHASKLSIDEEVYFENLMQLVEHYTTDADGLCTRLIKPKVMEGTVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRH 
         :                                                                                                                          
 1k9a(A) : VEHYRIMYHASKLSIDEEVYFENLMQLVEHYTTDADGLCTRLIKPKVMEGTVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRH 
           ______________________________________________174_______________________200_____________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1k9a(C) : SNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS-lPVKWTAPEALREKKFSTKSDVWS 
         :                                                                                                                          
 1k9a(A) : SNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASkLPVKWTAPEALREKKFSTKSDVWS 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________                                          
 1k9a(C) : FGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTHELHL                                          
         :                                                                                                                          
 1k9a(A) : FGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTHELHL                                          
           _______________________________________________________________________________                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
53.5
Translation
(A)
1.4
Closure
(%)
66.5
Bending Residues
( green )
  79 - 80
  174 - 176
  200 - 235
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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