Actin, Alpha Skeletal Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Alpha Skeletal Muscle
  Conformer 1
(PDB)
1d4x (A)
  Conformer 2
(PDB)
1j6z (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 243 0.92   6 - 7   70 - 75   99 - 110   124 - 126   128 - 345   347 - 347   354 - 354   356 - 356
2 116 1.22   8 - 69   76 - 98   111 - 123   127 - 127   346 - 346   348 - 353   355 - 355   357 - 369

Sequence


           ___7____________________________________________________________69___________________________98_________110__________123 
 1d4x(A) : EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV----gQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 
         :                                                                                                                          
 1j6z(A) : ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 
           ___7____________________________________________________________69___________________________98_________110__________123 

           ________________________________________________________________________________________________________________________ 
 1d4x(A) : FETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELP 
         :                                                                                                                          
 1j6z(A) : FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________345_____353__________ 
 1d4x(A) : DGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYD 
         :                                                                                                                          
 1j6z(A) : DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 
           ___________________________________________________________________________________________________345_____353__________ 

           ____________                                                                                                             
 1d4x(A) : ESGPSIVHRKCF                                                                                                             
         :                                                                                                                          
 1j6z(A) : EAGPSIVHR***                                                                                                             
           ____________                                                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.4
Translation
(A)
0.2
Closure
(%)
1.2
Bending Residues
( green )
  7 - 8
  69 - 76
  98 - 99
  110 - 111
  123 - 124
  126 - 128
  345 - 348
  353 - 357
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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