Cell Division Protein Kinase 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cell Division Protein Kinase 2
  Conformer 1
(PDB)
2b54 (A)
  Conformer 2
(PDB)
1qmz (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 267 4.48   5 - 36   57 - 292
2 20 3.35   37 - 56

Sequence


           ___________________________________36__________________56_______________________________________________________________ 
 2b54(A) : *MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 
         :                                                                                                                          
 1qmz(A) : SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 
           ___________________________________36__________________56_______________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2b54(A) : SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPS 
         :                                                                                                                          
 1qmz(A) : SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY-hEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPS 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________                                                              
 2b54(A) : FPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL                                                              
         :                                                                                                                          
 1qmz(A) : FPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHL**                                                              
           ___________________________________________________________                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
78.0
Translation
(A)
-2.4
Closure
(%)
76.6
Bending Residues
( green )
  36 - 38
  56 - 57
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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